seth

Class OldNomenclature

java.lang.Object

seth.OldNomenclature

public class OldNomenclature
extends Object

This class can be used to find mutation mentions (deletions, IVS-substitions, insertions, and frameshifts) written in deprecated nomenclature

Author:

Philippe Thomas

Constructor Summary

Constructors

Constructor and Description
OldNomenclature()

Method Summary

Modifier and Type	Method and Description
List<MutationMention>	extractMutations(String text) Extracts mentions of mutations from natural language text written in deprecated nomenclature

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OldNomenclature

public OldNomenclature()

Method Detail

extractMutations

public List<MutationMention> extractMutations(String text)

Extracts mentions of mutations from natural language text written in deprecated nomenclature

Parameters:

text - Input natural language text

Returns:

A list of MutationMention objects