Uses of Class
edu.uchsc.ccp.nlp.ei.mutation.MutationException

Packages that use MutationException

Package	Description
de.hu.berlin.wbi.process.osiris	Package to evaluate performance of SETH on the osiris dataset
edu.uchsc.ccp.nlp.ei.mutation	Contains the modified MutationFinder code Adaptations include the recognition of ambiguous mutations, non-synonymous mutations, and DNA mutations For the original code we refer to http://mutationfinder.sourceforge.net/

Uses of MutationException in de.hu.berlin.wbi.process.osiris

Methods in de.hu.berlin.wbi.process.osiris that throw MutationException

Modifier and Type	Method and Description
static void	ModifyOsiris.main(String[] args)

Uses of MutationException in edu.uchsc.ccp.nlp.ei.mutation

Methods in edu.uchsc.ccp.nlp.ei.mutation that throw MutationException

Modifier and Type	Method and Description
static PointMutation	PointMutation.createPointMutationFrom_wNm(String wNm) Create PointMutation from wNm-format, single-letter abbreviated mention.
Map<Mutation,Set<int[]>>	MutationFinder.extractMutations(String rawText) Extract point mutations mentions from raw_text and return them in a map.
abstract Map<Mutation,Set<int[]>>	MutationExtractor.extractMutations(String rawText) Extract point mutations mentions from raw_text and return them in a map.
char	PointMutation.normalizeResidueIdentity(String residue) Normalize three-letter and full residue names to their one-letter abbreviations.

Constructors in edu.uchsc.ccp.nlp.ei.mutation that throw MutationException

Constructor and Description
Mutation(int position)
PointMutation(String position, String wtResidue, String mutResidue)