Package edu.uchsc.ccp.nlp.ei.mutation

Contains the modified MutationFinder code Adaptations include the recognition of ambiguous mutations, non-synonymous mutations, and DNA mutations For the original code we refer to http://mutationfinder.sourceforge.net/

See: Description

Class Summary

Class	Description
Mutation	Mutation is a base class for different types of mutations.
MutationExtractor	A base class for extracting Mutations from text
MutationFinder	This is the Java implementation of MutationFinder (original version in Python by J.
MyPattern	This class contains an apache Pattern object and a pattern Id Especially useful to enable later which regex found which entity
PointMutation	A class for storing information about protein point mutations

Exception Summary

Exception	Description
MutationException	Exception thrown by MutationFinder

Package edu.uchsc.ccp.nlp.ei.mutation Description

Contains the modified MutationFinder code Adaptations include the recognition of ambiguous mutations, non-synonymous mutations, and DNA mutations For the original code we refer to http://mutationfinder.sourceforge.net/