de.hu.berlin.wbi.objects

Enum MatchOptions

java.lang.Object

java.lang.Enum<MatchOptions>

de.hu.berlin.wbi.objects.MatchOptions

All Implemented Interfaces:

Serializable, Comparable<MatchOptions>

public enum MatchOptions
extends Enum<MatchOptions>

Represents the different possibilities to match a MutationMention to a dbSNP entry or UniProt entry

Enum Constant Summary

Enum Constants

Enum Constant and Description
LOC Location matches exactly?
METHIONE Location matches by methionine
PSM Has been normalized to protein sequence? Otherwise nucleotide
SWAPPED Wildtype and Mutated alleles are swapped (e.g.

Method Summary

Modifier and Type	Method and Description
static MatchOptions	valueOf(String name) Returns the enum constant of this type with the specified name.
static MatchOptions[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

PSM

public static final MatchOptions PSM

Has been normalized to protein sequence? Otherwise nucleotide

LOC

public static final MatchOptions LOC

Location matches exactly?

METHIONE

public static final MatchOptions METHIONE

Location matches by methionine

SWAPPED

public static final MatchOptions SWAPPED

Wildtype and Mutated alleles are swapped (e.g. Ala123Tyr -> Tyr123Ala)

Method Detail

values

public static MatchOptions[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (MatchOptions c : MatchOptions.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static MatchOptions valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null