de.hu.berlin.wbi.objects

Class HGVS

java.lang.Object

de.hu.berlin.wbi.objects.HGVS

public class HGVS
extends Object

Represents a HGVS reference, like NR_027062.1:c.157+25766C>T. This class is only used for normalization issues.

Author:

Philippe Thomas

Constructor Summary

Constructors

Constructor and Description
HGVS(String string) Construct a HGVS object based on a HGVS string (e.g.

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj) (non-Javadoc)
String	getLocation() Gets the location.
String	getMutation() Gets the mutation.
char	getType() Gets the mutation type (e.g.
String	getWildtype() Gets the wild-type.
int	hashCode() (non-Javadoc)
String	toString() (non-Javadoc)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

HGVS

public HGVS(String string)

Construct a HGVS object based on a HGVS string (e.g. "NM_123c.234A>T")

Parameters:

string - HGVS mention

Method Detail

hashCode

public int hashCode()

(non-Javadoc)

Overrides:

hashCode in class Object

See Also:

Object.hashCode()

equals

public boolean equals(Object obj)

(non-Javadoc)

Overrides:

equals in class Object

See Also:

Object.equals(java.lang.Object)

toString

public String toString()

(non-Javadoc)

Overrides:

toString in class Object

See Also:

Object.toString()

getType

public char getType()

Gets the mutation type (e.g. c., p., or g.)

Returns:

the location

getLocation

public String getLocation()

Gets the location.

Returns:

the location

getWildtype

public String getWildtype()

Gets the wild-type.

Returns:

the wild-type

getMutation

public String getMutation()

Gets the mutation.

Returns:

the mutation