Package seth.ner.wrapper

Java wrapper for accessing the scala part of SETH (aka SETH-NER) SETH-NER performs Named Entity Recognition of variation mentions in the latest HGVS nomenclature based on a Backus Naur grammar

See: Description

Class Summary

Class	Description
SETHNER	Java wrapper for actual seth.ner.SETHNER code written in Scala
SETHNERApp	Minimal example to apply SETHNER (exluding MutationFinder) on free text
SETHNERAppMut	Minimal example to apply SETHNER (including MutationFinder) on free text

Enum Summary

Enum	Description
Type	Mutation types found by SETHNER, MutationFinder currently extracts only Substitutions

Package seth.ner.wrapper Description

Java wrapper for accessing the scala part of SETH (aka SETH-NER) SETH-NER performs Named Entity Recognition of variation mentions in the latest HGVS nomenclature based on a Backus Naur grammar

Author:

Philippe Thomas, Tim Rocktäschel